Install from a platform-specific installer or cross-platform tarball then a working version of Apache Maths and JOptimizer Some of the tools in SPECTRE use external mathematical optimizers for solving linear and quadratic problems. The necessary steps for all methods are described in the following sections. SPECTRE can be installed via three main methods either from a platform-specific install, pre-packaged tarball, or directlyįrom github source repository via a git clone. SPECTRE also contains a libraryĬontaining data structures and algorithms that can be leveraged by third party applications. It contains a number of previous published toolsįor generating phylogenetic networks for various types from a range of different inputs. Visualising reticulate evolution via phylogenetic trees and networks.
The aim of this project was to create a single project that contains a number of reusable tools for modelling and Suite of PhylogEnetiC Tools for Reticulate Evolution (SPECTRE)
spectre A collection of Phylogenetics tools for creating and manipulating networks and trees. Spectre | A collection of Phylogenetics tools for creating and manipulating networks and trees.
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